@prefix : . @prefix owl: . @prefix rdf: . @prefix xml: . @prefix xsd: . @prefix rdfs: . @base . rdf:type owl:Ontology ; "Shweta U. Narkar" ; "Prebiotic Origins of Life Ontology (POLO)" ; "POLO provides a structured vocabulary for annotating and querying experimental prebiotic chemistry data, covering batch and continuous flowthrough experiment types." ; rdfs:comment "Ontology for experimental prebiotic chemistry. Developed as part of the EORE (Executable Online Resource of Experimental Data) project at Rensselaer Polytechnic Institute." ; rdfs:label "Prebiotic Origins of Life Ontology (POLO)" . ################################################################# # Annotation properties ################################################################# ### http://purl.org/dc/elements/1.1/creator rdf:type owl:AnnotationProperty . ### http://purl.org/dc/elements/1.1/description rdf:type owl:AnnotationProperty . ################################################################# # Object Properties ################################################################# ### https://purl.org/polo#hasConditions :hasConditions rdf:type owl:ObjectProperty ; rdfs:comment "Links an experiment state to its system conditions." ; rdfs:label "hasConditions" . ### https://purl.org/polo#hasExperimentType :hasExperimentType rdf:type owl:ObjectProperty ; rdfs:domain :ExperimentSetup ; rdfs:range :ExperimentType ; rdfs:label "hasExperimentType" . ### https://purl.org/polo#hasMeasurement :hasMeasurement rdf:type owl:ObjectProperty ; rdfs:comment "Links a phase or condition to its method of measurement." ; rdfs:label "hasMeasurement" . ### https://purl.org/polo#hasMetadata :hasMetadata rdf:type owl:ObjectProperty ; rdfs:domain :Experiment ; rdfs:range :PaperMetadata ; rdfs:comment "Links an experiment to its paper metadata provenance." ; rdfs:label "hasMetadata" . ### https://purl.org/polo#hasPhase :hasPhase rdf:type owl:ObjectProperty ; rdfs:comment "Links an experiment state to one of its phases (gas, liquid, solid)." ; rdfs:label "hasPhase" . ### https://purl.org/polo#hasSetup :hasSetup rdf:type owl:ObjectProperty ; rdfs:domain :Experiment ; rdfs:range :ExperimentSetup ; rdfs:comment "Links an experiment to its experimental setup." ; rdfs:label "hasSetup" . ### https://purl.org/polo#hasState :hasState rdf:type owl:ObjectProperty ; rdfs:domain :Batch ; rdfs:range :ExperimentState ; rdfs:comment "Links a batch experiment to its initial or final state." ; rdfs:label "hasState" . ### https://purl.org/polo#hasUnit :hasUnit rdf:type owl:ObjectProperty ; rdfs:comment "Links a measurement to its unit of measurement from the Units Ontology." ; rdfs:label "hasUnit" . ################################################################# # Data properties ################################################################# ### https://purl.org/polo#ambientAtmosphere :ambientAtmosphere rdf:type owl:DatatypeProperty ; rdfs:domain :GasPhase ; rdfs:range xsd:boolean ; rdfs:label "ambientAtmosphere" . ### https://purl.org/polo#containerMaterial :containerMaterial rdf:type owl:DatatypeProperty ; rdfs:domain :LoadingConditions ; rdfs:range xsd:string ; rdfs:label "containerMaterial" . ### https://purl.org/polo#durationHrs :durationHrs rdf:type owl:DatatypeProperty ; rdfs:domain :ExperimentSetup ; rdfs:range xsd:decimal ; rdfs:comment "Duration of the experiment in hours." ; rdfs:label "durationHrs" . ### https://purl.org/polo#formOfAmorphSolid :formOfAmorphSolid rdf:type owl:DatatypeProperty ; rdfs:domain :SolidPhase ; rdfs:range xsd:string ; rdfs:comment "Form of amorphous solid e.g. chunk or powder." ; rdfs:label "formOfAmorphSolid" . ### https://purl.org/polo#freqOfMonomer :freqOfMonomer rdf:type owl:DatatypeProperty ; rdfs:domain :LiquidPhase ; rdfs:range xsd:integer ; rdfs:label "freqOfMonomer" . ### https://purl.org/polo#gasConcentration :gasConcentration rdf:type owl:DatatypeProperty ; rdfs:domain :GasPhase ; rdfs:range xsd:decimal ; rdfs:label "gasConcentration" . ### https://purl.org/polo#gasIsMeasured :gasIsMeasured rdf:type owl:DatatypeProperty ; rdfs:domain :GasPhase ; rdfs:range xsd:boolean ; rdfs:label "gasIsMeasured" . ### https://purl.org/polo#gasName :gasName rdf:type owl:DatatypeProperty ; rdfs:domain :GasPhase ; rdfs:range xsd:string ; rdfs:label "gasName" . ### https://purl.org/polo#isIsobaric :isIsobaric rdf:type owl:DatatypeProperty ; rdfs:range xsd:boolean ; rdfs:label "isIsobaric" . ### https://purl.org/polo#isIsochoric :isIsochoric rdf:type owl:DatatypeProperty ; rdfs:range xsd:boolean ; rdfs:label "isIsochoric" . ### https://purl.org/polo#isIsothermal :isIsothermal rdf:type owl:DatatypeProperty ; rdfs:range xsd:boolean ; rdfs:label "isIsothermal" . ### https://purl.org/polo#isPolymer :isPolymer rdf:type owl:DatatypeProperty ; rdfs:domain :LiquidPhase ; rdfs:range xsd:boolean ; rdfs:label "isPolymer" . ### https://purl.org/polo#isRoomTemperature :isRoomTemperature rdf:type owl:DatatypeProperty ; rdfs:range xsd:boolean ; rdfs:label "isRoomTemperature" . ### https://purl.org/polo#liquidIsMeasured :liquidIsMeasured rdf:type owl:DatatypeProperty ; rdfs:domain :LiquidPhase ; rdfs:range xsd:boolean ; rdfs:label "liquidIsMeasured" . ### https://purl.org/polo#maxGrainSize :maxGrainSize rdf:type owl:DatatypeProperty ; rdfs:domain :SolidPhase ; rdfs:range xsd:decimal ; rdfs:comment "Maximum grain size in micrometres." ; rdfs:label "maxGrainSize" . ### https://purl.org/polo#minGrainSize :minGrainSize rdf:type owl:DatatypeProperty ; rdfs:domain :SolidPhase ; rdfs:range xsd:decimal ; rdfs:comment "Minimum grain size in micrometres." ; rdfs:label "minGrainSize" . ### https://purl.org/polo#monomerName :monomerName rdf:type owl:DatatypeProperty ; rdfs:domain :LiquidPhase ; rdfs:range xsd:string ; rdfs:label "monomerName" . ### https://purl.org/polo#noOfUniqueMonomers :noOfUniqueMonomers rdf:type owl:DatatypeProperty ; rdfs:domain :LiquidPhase ; rdfs:range xsd:integer ; rdfs:label "noOfUniqueMonomers" . ### https://purl.org/polo#paperAuthor :paperAuthor rdf:type owl:DatatypeProperty ; rdfs:domain :PaperMetadata ; rdfs:range xsd:string ; rdfs:label "paperAuthor" . ### https://purl.org/polo#paperDoi :paperDoi rdf:type owl:DatatypeProperty ; rdfs:domain :PaperMetadata ; rdfs:range xsd:string ; rdfs:label "paperDoi" . ### https://purl.org/polo#paperJournal :paperJournal rdf:type owl:DatatypeProperty ; rdfs:domain :PaperMetadata ; rdfs:range xsd:string ; rdfs:label "paperJournal" . ### https://purl.org/polo#paperTitle :paperTitle rdf:type owl:DatatypeProperty ; rdfs:domain :PaperMetadata ; rdfs:range xsd:string ; rdfs:label "paperTitle" . ### https://purl.org/polo#paperYear :paperYear rdf:type owl:DatatypeProperty ; rdfs:domain :PaperMetadata ; rdfs:range xsd:integer ; rdfs:label "paperYear" . ### https://purl.org/polo#particleSizeUnknown :particleSizeUnknown rdf:type owl:DatatypeProperty ; rdfs:domain :SolidPhase ; rdfs:range xsd:boolean ; rdfs:label "particleSizeUnknown" . ### https://purl.org/polo#polymerLength :polymerLength rdf:type owl:DatatypeProperty ; rdfs:domain :LiquidPhase ; rdfs:range xsd:decimal ; rdfs:comment "Maximum or average polymer length observed." ; rdfs:label "polymerLength" . ### https://purl.org/polo#polymerLengthUnknown :polymerLengthUnknown rdf:type owl:DatatypeProperty ; rdfs:domain :LiquidPhase ; rdfs:range xsd:boolean ; rdfs:label "polymerLengthUnknown" . ### https://purl.org/polo#pressure :pressure rdf:type owl:DatatypeProperty ; rdfs:range xsd:decimal ; rdfs:comment "System pressure in bars." ; rdfs:label "pressure" . ### https://purl.org/polo#replicatesCount :replicatesCount rdf:type owl:DatatypeProperty ; rdfs:domain :ExperimentSetup ; rdfs:range xsd:integer ; rdfs:label "replicatesCount" . ### https://purl.org/polo#solidIsMeasured :solidIsMeasured rdf:type owl:DatatypeProperty ; rdfs:domain :SolidPhase ; rdfs:range xsd:boolean ; rdfs:label "solidIsMeasured" . ### https://purl.org/polo#solidMass :solidMass rdf:type owl:DatatypeProperty ; rdfs:domain :SolidPhase ; rdfs:range xsd:decimal ; rdfs:comment "Solid mass in milligrams." ; rdfs:label "solidMass" . ### https://purl.org/polo#solidName :solidName rdf:type owl:DatatypeProperty ; rdfs:domain :SolidPhase ; rdfs:range xsd:string ; rdfs:label "solidName" . ### https://purl.org/polo#solidType :solidType rdf:type owl:DatatypeProperty ; rdfs:domain :SolidPhase ; rdfs:range xsd:string ; rdfs:comment "Type of solid e.g. mineral, amorphous, rock, other." ; rdfs:label "solidType" . ### https://purl.org/polo#soluteConcentration :soluteConcentration rdf:type owl:DatatypeProperty ; rdfs:domain :LiquidPhase ; rdfs:range xsd:decimal ; rdfs:comment "Solute concentration in mM/L." ; rdfs:label "soluteConcentration" . ### https://purl.org/polo#soluteConcentrationUnknown :soluteConcentrationUnknown rdf:type owl:DatatypeProperty ; rdfs:domain :LiquidPhase ; rdfs:range xsd:boolean ; rdfs:label "soluteConcentrationUnknown" . ### https://purl.org/polo#soluteName :soluteName rdf:type owl:DatatypeProperty ; rdfs:domain :LiquidPhase ; rdfs:range xsd:string ; rdfs:label "soluteName" . ### https://purl.org/polo#solventName :solventName rdf:type owl:DatatypeProperty ; rdfs:domain :LiquidPhase ; rdfs:range xsd:string ; rdfs:label "solventName" . ### https://purl.org/polo#solventType :solventType rdf:type owl:DatatypeProperty ; rdfs:domain :LiquidPhase ; rdfs:range xsd:string ; rdfs:comment "Type of solvent e.g. organic or inorganic." ; rdfs:label "solventType" . ### https://purl.org/polo#systemType :systemType rdf:type owl:DatatypeProperty ; rdfs:domain :ExperimentSetup ; rdfs:range xsd:string ; rdfs:label "systemType" . ### https://purl.org/polo#temperature :temperature rdf:type owl:DatatypeProperty ; rdfs:range xsd:decimal ; rdfs:comment "System temperature in Celsius." ; rdfs:label "temperature" . ### https://purl.org/polo#unknownReplicatesCount :unknownReplicatesCount rdf:type owl:DatatypeProperty ; rdfs:domain :ExperimentSetup ; rdfs:range xsd:boolean ; rdfs:label "unknownReplicatesCount" . ### https://purl.org/polo#volume :volume rdf:type owl:DatatypeProperty ; rdfs:range xsd:decimal ; rdfs:comment "System volume in millilitres." ; rdfs:label "volume" . ################################################################# # Classes ################################################################# ### https://purl.org/polo#Analysis :Analysis rdf:type owl:Class ; rdfs:subClassOf :Flowthrough , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :GasPhase ] , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :LiquidPhase ] , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :SolidPhase ] ; rdfs:comment "The analysis component of a flowthrough experiment." ; rdfs:label "Analysis" . ### https://purl.org/polo#Batch :Batch rdf:type owl:Class ; rdfs:subClassOf :ExperimentType , [ rdf:type owl:Restriction ; owl:onProperty :hasConditions ; owl:someValuesFrom :LoadingConditions ] , [ rdf:type owl:Restriction ; owl:onProperty :hasState ; owl:someValuesFrom :FinalState ] , [ rdf:type owl:Restriction ; owl:onProperty :hasState ; owl:someValuesFrom :InitialState ] ; rdfs:comment "A batch experiment where a measured amount of chemical compositions interact over a fixed duration with no additions during the process." ; rdfs:label "Batch" . ### https://purl.org/polo#Conditions :Conditions rdf:type owl:Class ; rdfs:comment "System conditions for an experiment at a given state." ; rdfs:label "Conditions" . ### https://purl.org/polo#Continuous :Continuous rdf:type owl:Class ; rdfs:subClassOf :Flowthrough , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :GasPhase ] , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :LiquidPhase ] ; rdfs:comment "The continuous component of a flowthrough experiment where fluid passes through the stationary stage." ; rdfs:label "Continuous" . ### https://purl.org/polo#Experiment :Experiment rdf:type owl:Class ; rdfs:subClassOf [ rdf:type owl:Restriction ; owl:onProperty :hasMetadata ; owl:someValuesFrom :PaperMetadata ] , [ rdf:type owl:Restriction ; owl:onProperty :hasSetup ; owl:someValuesFrom :ExperimentSetup ] ; rdfs:comment "The top-level class representing a prebiotic chemistry experiment reported in a scientific paper." ; rdfs:label "Experiment" . ### https://purl.org/polo#ExperimentSetup :ExperimentSetup rdf:type owl:Class ; rdfs:comment "Describes the experimental setup parameters for a given experiment." ; rdfs:label "ExperimentSetup" . ### https://purl.org/polo#ExperimentState :ExperimentState rdf:type owl:Class ; rdfs:comment "A state of a batch experiment, either initial or final." ; rdfs:label "ExperimentState" . ### https://purl.org/polo#ExperimentType :ExperimentType rdf:type owl:Class ; rdfs:subClassOf :ExperimentSetup ; rdfs:comment "The type of prebiotic chemistry experiment." ; rdfs:label "ExperimentType" . ### https://purl.org/polo#FinalState :FinalState rdf:type owl:Class ; rdfs:subClassOf :ExperimentState , [ rdf:type owl:Restriction ; owl:onProperty :hasConditions ; owl:someValuesFrom :FinalSystemConditions ] , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :GasPhase ] , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :LiquidPhase ] , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :SolidPhase ] ; rdfs:comment "The final state of a batch experiment after conditions have been applied." ; rdfs:label "FinalState" . ### https://purl.org/polo#FinalSystemConditions :FinalSystemConditions rdf:type owl:Class ; rdfs:subClassOf :Conditions ; rdfs:comment "System conditions recorded at the final state of a batch experiment." ; rdfs:label "FinalSystemConditions" . ### https://purl.org/polo#Flowthrough :Flowthrough rdf:type owl:Class ; rdfs:subClassOf :ExperimentType , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :GasPhase ] , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :LiquidPhase ] , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :SolidPhase ] ; rdfs:comment "A continuous flowthrough experiment." ; rdfs:label "Flowthrough" . ### https://purl.org/polo#GasPhase :GasPhase rdf:type owl:Class ; rdfs:subClassOf :Phases ; rdfs:comment "The gas phase component of an experiment." ; rdfs:label "GasPhase" . ### https://purl.org/polo#InitialState :InitialState rdf:type owl:Class ; rdfs:subClassOf :ExperimentState , [ rdf:type owl:Restriction ; owl:onProperty :hasConditions ; owl:someValuesFrom :InitialSystemConditions ] , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :GasPhase ] , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :LiquidPhase ] , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :SolidPhase ] ; rdfs:comment "The initial state of a batch experiment before conditions are applied." ; rdfs:label "InitialState" . ### https://purl.org/polo#InitialSystemConditions :InitialSystemConditions rdf:type owl:Class ; rdfs:subClassOf :Conditions ; rdfs:comment "System conditions recorded at the initial state of a batch experiment." ; rdfs:label "InitialSystemConditions" . ### https://purl.org/polo#LiquidPhase :LiquidPhase rdf:type owl:Class ; rdfs:subClassOf :Phases ; rdfs:comment "The liquid phase component of an experiment." ; rdfs:label "LiquidPhase" . ### https://purl.org/polo#LoadingConditions :LoadingConditions rdf:type owl:Class ; rdfs:subClassOf :Conditions ; rdfs:comment "Conditions at the loading stage of a batch experiment." ; rdfs:label "LoadingConditions" . ### https://purl.org/polo#PaperMetadata :PaperMetadata rdf:type owl:Class ; rdfs:comment "Provenance information about the scientific paper in which the experiment was reported." ; rdfs:label "PaperMetadata" . ### https://purl.org/polo#Phases :Phases rdf:type owl:Class ; rdfs:comment "The phases of matter present in an experiment." ; rdfs:label "Phases" . ### https://purl.org/polo#SolidPhase :SolidPhase rdf:type owl:Class ; rdfs:subClassOf :Phases ; rdfs:comment "The solid phase component of an experiment." ; rdfs:label "SolidPhase" . ### https://purl.org/polo#Stationary :Stationary rdf:type owl:Class ; rdfs:subClassOf :Flowthrough , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :LiquidPhase ] , [ rdf:type owl:Restriction ; owl:onProperty :hasPhase ; owl:someValuesFrom :SolidPhase ] ; rdfs:comment "The stationary component of a flowthrough experiment." ; rdfs:label "Stationary" . ### Generated by the OWL API (version 5.1.18) https://github.com/owlcs/owlapi/